2001 allroad BHW diesel swap - Need help with ABS module

[arjax]

Hello...I just completed a BHW diesel swap into my 2001 Audi allroad using a 2004 Passat donor car. It is running well but I am having trouble with the ABS module (5.3) as it still thinks the car is automatic. The car is currently displaying the three warning lights on the dash for suspension, abs, and esp. I did try replacing the brake light switch just to be sure that wasn't the cause but no change. Also, I can't seem to get the car to do the ESP function test. When I try to do the test, VCDS loses communication with the module as soon as I turn the wheel (I am assuming this is related to the powertrain error). I am hoping some can point in the right direction. Below is the scan for the car.

Address 03: ABS Brakes        Labels: 8D0-907-389.lbl
   Part No: 4Z7 907 389
   Component: ABS/ESP allrad      D47 
   Coding: 06355
   Shop #: WSC 00000 
   VCID: 091997A1337294CC55-5140

2 Faults Found:
01486 - System Function Test Activated
            35-00 - -
18263 - Powertrain Data Bus
            P1855 - 35-00 - Software Version Monitoring

The car was originally an automatic 01V tiptronic, but I swapped that out several years ago for a 6spd 01E. During that swap, I was able to recode the ABS module and had no issues with it. Below is the last scan I had taken before the engine jumped timing.

Address 03: ABS Brakes        Labels: 8D0-907-389.lbl
   Part No: 4Z7 907 389
   Component: ABS/ESP allrad      D47 
   Coding: 06395
   Shop #: WSC 00000 
   VCID: 091997A133729407F2-5140

No fault code found.

Below is the scan I took of the donor car before removing the engine.

Address 03: ABS Brakes        Labels: 4B0-614-517.lbl
   Part No: 4B0 614 517 G
   Component: ABS/ESP front       3428 
   Coding: 04257
   Shop #: WSC 00028 
   VCID: 2541FB11BFAAD06ED9-5122

2 Faults Found:
00778 - Steering Angle Sensor (G85)
            37-00 - Faulty
00285 - ABS Wheel Speed Sensor; Front Right (G45)
            27-00 - Implausible Signal